Quick Install

You can easily install TileDB-VCF via conda or use one of our Docker images.

Python

# Install the TileDB-VCF python package
conda install -c conda-forge -c bioconda -c tiledb tiledbvcf-py

# Verify the installation
python -c "import tiledbvcf; print(tiledbvcf.version)"

CLI

# Install the CLI and shared library
conda install -c conda-forge -c bioconda -c tiledb libtiledbvcf

# Verify the installation
tiledbvcf version

Docker

Pre-built Docker images are available on Docker Hub.

Available images

• tiledbvcf-cli for the CLI

• tiledbvcf-py for the Python package

Supported tags

• latest: latest stable release (recommended)

• dev: development version

• v0.x.x for a specific version

Example usage

# CLI
docker run --rm tiledb/tiledbvcf-cli list \
  --uri s3://tiledb-inc-demo-data/tiledbvcf-arrays/v4/vcf-samples-20
  
# Python
docker run -it --rm tiledb/tiledbvcf-py